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1

The Escherichia coli SeqA protein

Torsten Waldminghaus, Kirsten Skarstad

Journal:

Year:

2009

Language:

english

File:

PDF, 289 KB

english, 2009

2

Web 2.0 – auf dem Weg zur offenen Wissenschaft

Torsten Waldminghaus

Journal:

Biologie in unserer Zeit

Year:

2008

Language:

german

File:

PDF, 88 KB

german, 2008

3

ChIP on Chip: eine Methode liefert überraschende Ergebnisse

Torsten Waldminghaus

Journal:

Biologie in unserer Zeit

Year:

2010

Language:

german

File:

PDF, 567 KB

german, 2010

4

Genome-wide bioinformatic prediction and experimental evaluation of potential RNA thermometers

Torsten Waldminghaus, Lena C. Gaubig, Franz Narberhaus

Journal:

Molecular Genetics and Genomics

Year:

2007

Language:

english

File:

PDF, 548 KB

english, 2007

5

FourU: a novel type of RNA thermometer in Salmonella

Torsten Waldminghaus, Nadja Heidrich, Sabine Brantl, Franz Narberhaus

Journal:

Molecular Microbiology

Year:

2007

Language:

english

File:

PDF, 485 KB

english, 2007

6

The G157C mutation in the Escherichia coli sliding clamp specifically affects initiation of replication

Line Johnsen, Ingvild Flåtten, Morigen, Bjørn Dalhus, Magnar Bjørås, Torsten Waldminghaus, Kirsten Skarstad

Journal:

Molecular Microbiology

Year:

2011

Language:

english

File:

PDF, 652 KB

english, 2011

7

RNA thermometers

Franz Narberhaus, Torsten Waldminghaus, Saheli Chowdhury

Journal:

FEMS Microbiology Reviews

Year:

2006

Language:

english

File:

PDF, 286 KB

english, 2006

8

ChIP on Chip: surprising results are often artifacts

Torsten Waldminghaus, Kirsten Skarstad

Journal:

Year:

2010

Language:

english

File:

PDF, 2.11 MB

english, 2010

9

“Non-canonical protein-DNA interactions identified by ChIP are not artifacts”: response

Schindler, Daniel, Waldminghaus, Torsten

Journal:

Year:

2013

Language:

english

File:

PDF, 371 KB

english, 2013

10

Synthetic secondary chromosomes in Escherichia coli based on the replication origin of chromosome II in Vibrio cholerae

Messerschmidt, Sonja J., Kemter, Franziska S., Schindler, Daniel, Waldminghaus, Torsten

Journal:

Biotechnology Journal

Year:

2015

Language:

english

File:

PDF, 840 KB

english, 2015

11

Dynamic Organization: Chromosome Domains in Escherichia coli

Messerschmidt, Sonja Julia, Waldminghaus, Torsten

Journal:

Journal of Molecular Microbiology and Biotechnology

Year:

2015

Language:

english

File:

PDF, 466 KB

english, 2015

12

Fine-Tuning in Regulation of Clp Protein Content in Bacillus subtilis

Gerth, U., Kirstein, J., Mostertz, J., Waldminghaus, T., Miethke, M., Kock, H., Hecker, M.

Journal:

Journal of Bacteriology

Year:

2004

Language:

english

File:

PDF, 2.11 MB

english, 2004

13

Replication fork movement and methylation govern SeqA binding to the Escherichia coli chromosome

Waldminghaus, T., Weigel, C., Skarstad, K.

Journal:

Nucleic Acids Research

Year:

2012

Language:

english

File:

PDF, 6.63 MB

english, 2012

14

Replication patterns and organization of replication forks in Vibrio cholerae

Stokke, C., Waldminghaus, T., Skarstad, K.

Journal:

Microbiology (Society for General Microbiology)

Year:

2011

Language:

english

File:

PDF, 1.05 MB

english, 2011

15

synVicII — ein zweites Chromosom fürEscherichia coli

Messerschmidt, Sonja Julia, Waldminghaus, Torsten

Journal:

Year:

2015

Language:

german

File:

PDF, 278 KB

german, 2015

16

RNA thermometers are common in α- and γ-proteobacteria

Waldminghaus, Torsten, Fippinger, Anja, Alfsmann, Juliane, Narberhaus, Franz

Journal:

Biological Chemistry

Year:

2005

Language:

english

File:

PDF, 267 KB

english, 2005

17

Generation of synthetic RNA-based thermosensors

Waldminghaus, Torsten, Kortmann, Jens, Gesing, Stefan, Narberhaus, Franz

Journal:

Biological Chemistry

Year:

2008

Language:

english

File:

PDF, 246 KB

english, 2008

18

Multiple layers of control govern expression of the Escherichia coli ibpAB heat-shock operon

Gaubig, L. C., Waldminghaus, T., Narberhaus, F.

Journal:

Microbiology (Society for General Microbiology)

Year:

2011

Language:

english

File:

PDF, 509 KB

english, 2011

19

Synthetic chromosomes

Schindler, Daniel, Waldminghaus, Torsten, Albers, Sonja-Verena

Journal:

FEMS Microbiology Reviews

Year:

2015

Language:

english

File:

PDF, 2.21 MB

english, 2015

20

The Escherichia coli ibpA thermometer is comprised of stable and unstable structural elements

Waldminghaus, Torsten, Gaubig, Lena C., Klinkert, Birgit, Narberhaus, Franz

Journal:

Year:

2009

Language:

english

File:

PDF, 1.07 MB

english, 2009

21

DNA replication in engineered Escherichia coli genomes with extra replication origins

Milbredt, Sarah, Farmani, Neda, Sobetzko, Patrick, Waldminghaus, Torsten

Journal:

ACS Synthetic Biology

Year:

2016

Language:

english

File:

PDF, 1.80 MB

english, 2016

22

Design and assembly of DNA sequence libraries for chromosomal insertion in bacteria based on a set of modified MoClo vectors

Schindler, Daniel, Milbredt, Sarah, Sperlea, Theodor, Waldminghaus, Torsten

Journal:

ACS Synthetic Biology

Year:

2016

Language:

english

File:

PDF, 1.39 MB

english, 2016

23

Editorial overview: Synthetic biology – From understanding to engineering biology and back

Bange, Gert, Waldminghaus, Torsten

Journal:

Current Opinion in Chemical Biology

Year:

2016

Language:

english

File:

PDF, 179 KB

english, 2016

24

BiFCROS: A Low Background Fluorescence Repressor Operator System for Labeling of Genomic Loci

Milbredt, Sarah, Waldminghaus, Torsten

Journal:

G3 Genes|Genome|Genetics

Year:

2017

Language:

english

File:

PDF, 1.42 MB

english, 2017

25

Phenotypes of dnaX E145A mutant cells indicate that the Escherichia coli clamp loader has a role in the restart of stalled replication forks

Flåtten, Ingvild, Helgesen, Emily, Pedersen, Ida Benedikte, Waldminghaus, Torsten, Rothe, Christiane, Taipale, Riikka, Johnsen, Line, Skarstad, Kirsten

Journal:

Journal of Bacteriology

Year:

2017

Language:

english

File:

PDF, 2.48 MB

english, 2017

26

Synchronous termination of replication of the two chromosomes is an evolutionary selected feature in Vibrionaceae

Kemter, Franziska S., Messerschmidt, Sonja J., Schallopp, Nadine, Sobetzko, Patrick, Lang, Elke, Bunk, Boyke, Spröer, Cathrin, Teschler, Jennifer K., Yildiz, Fitnat H., Overmann, Jörg, Waldminghaus, T

Journal:

Year:

2018

Language:

english

File:

PDF, 5.87 MB

english, 2018

27

Exception to the Rule: Genomic Characterization of Naturally Occurring Unusual Vibrio cholerae Strains with a Single Chromosome

Xie, Gary, Johnson, Shannon L., Davenport, Karen W., Rajavel, Mathumathi, Waldminghaus, Torsten, Detter, John C., Chain, Patrick S., Sozhamannan, Shanmuga

Journal:

International Journal of Genomics

Year:

2017

Language:

english

File:

PDF, 3.04 MB

english, 2017

28

Establishing a System for Testing Replication Inhibition of the Vibrio cholerae Secondary Chromosome in Escherichia coli

Schallopp, Nadine, Milbredt, Sarah, Sperlea, Theodor, Kemter, Franziska, Bruhn, Matthias, Schindler, Daniel, Waldminghaus, Torsten

Journal:

Year:

2017

Language:

english

File:

PDF, 3.44 MB

english, 2017

29

Optimization and Characterization of the Synthetic Secondary Chromosome synVicII in Escherichia coli

Messerschmidt, Sonja J., Schindler, Daniel, Zumkeller, Celine M., Kemter, Franziska S., Schallopp, Nadine, Waldminghaus, Torsten

Journal:

Frontiers in Bioengineering and Biotechnology

Year:

2016

Language:

english

File:

PDF, 2.72 MB

english, 2016

30

DistAMo: A Web-Based Tool to Characterize DNA-Motif Distribution on Bacterial Chromosomes

Sobetzko, Patrick, Jelonek, Lukas, Strickert, Marc, Han, Wenxia, Goesmann, Alexander, Waldminghaus, Torsten

Journal:

Frontiers in Microbiology

Year:

2016

Language:

english

File:

PDF, 3.58 MB

english, 2016

31

Functionality of Two Origins of Replication in Vibrio cholerae Strains With a Single Chromosome

Bruhn, Matthias, Schindler, Daniel, Kemter, Franziska S., Wiley, Michael R., Chase, Kitty, Koroleva, Galina I., Palacios, Gustavo, Sozhamannan, Shanmuga, Waldminghaus, Torsten

Journal:

Frontiers in Microbiology

Year:

2018

Language:

english

File:

PDF, 4.98 MB

english, 2018

32

Stringent response leads to continued cell division and a temporal re‐start of DNA replication after initial shutdown in Vibrio cholerae

Kemter, Franziska S., Schallopp, Nadine, Sperlea, Theodor, Serrania, Javier, Sobetzko, Patrick, Fritz, Georg, Waldminghaus, Torsten

Journal:

Molecular Microbiology

Year:

2019

File:

PDF, 1.71 MB

2019

33

gammaBOriS: Identification and Taxonomic Classification of Origins of Replication in Gammaproteobacteria using Motif-based Machine Learning

Sperlea, Theodor, Muth, Lea, Martin, Roman, Weigel, Christoph, Waldminghaus, Torsten, Heider, Dominik

Journal:

Scientific Reports

Year:

2020

File:

PDF, 1.59 MB

2020

34

Vibrio natriegens : An ultrafastâgrowing marine bacterium as emerging synthetic biology chassis

Hoff, Josef, Daniel, Benjamin, Stukenberg, Daniel, Thuronyi, Benjamin W., Waldminghaus, Torsten, Fritz, Georg

Journal:

Environmental Microbiology

Year:

2020

File:

PDF, 2.95 MB

2020

35

Exception to the Exception Rule: Synthetic and Naturally Occurring Single Chromosome Vibrio cholerae

Sozhamannan, Shanmuga, Waldminghaus, Torsten

Journal:

Environmental Microbiology

Year:

2020

File:

PDF, 817 KB

2020

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